-- HapMap data release #19, October 2005, on NCBI B34 assembly, dbSNP b124 -- This release contains all processed data from the HapMap project, and includes all data from phases I+II of the project. Genotype totals: Chrom CEU CHB JPT YRI ------------------------------------------------------------ chr1 QC+ 294158 299887 299820 291641 chr1 Total 452581 452515 452515 452573 chr2 QC+ 341068 340698 340681 329406 chr2 Total 529264 527000 527000 527734 chr3 QC+ 251575 246799 246748 243196 chr3 Total 388015 370862 370862 378471 chr4 QC+ 237443 235626 235541 227597 chr4 Total 364437 363311 363311 363353 chr5 QC+ 243091 242588 242596 235239 chr5 Total 347177 340011 340011 342022 chr6 QC+ 266925 267732 267595 263133 chr6 Total 386131 378572 378572 386248 chr7 QC+ 206515 202584 202543 197755 chr7 Total 302572 296170 296170 299398 chr8 QC+ 210755 212514 212427 207836 chr8 Total 301965 297829 297829 300677 chr9 QC+ 178207 178796 178780 175284 chr9 Total 257037 260856 260856 262169 chr10 QC+ 205076 207495 207489 204023 chr10 Total 307570 305772 305772 308844 chr11 QC+ 197545 199154 199164 190638 chr11 Total 297481 292968 292968 293456 chr12 QC+ 189834 188450 188465 186192 chr12 Total 279403 274156 274156 275836 chr13 QC+ 153908 155063 154976 153139 chr13 Total 229548 225945 225945 230058 chr14 QC+ 121291 121359 121341 117477 chr14 Total 173602 169269 169269 170649 chr15 QC+ 104882 104540 104534 101408 chr15 Total 150653 145727 145727 147386 chr16 QC+ 105985 106075 106036 102088 chr16 Total 170126 167134 167134 167122 chr17 QC+ 87099 86722 86733 84110 chr17 Total 142081 138541 138541 139132 chr18 QC+ 117973 117950 117892 115088 chr18 Total 164710 166105 166105 166193 chr19 QC+ 54213 53972 53996 52327 chr19 Total 102133 98779 98779 99445 chr20 QC+ 118707 117530 117442 115476 chr20 Total 181411 178164 178164 179596 chr21 QC+ 48844 49653 49650 48292 chr21 Total 86218 83911 83911 85418 chr22 QC+ 54376 55675 55692 55115 chr22 Total 97026 97089 97089 98399 chrX QC+ 111671 112401 112222 110201 chrX Total 183229 181990 181990 182973 chrY QC+ 69 70 69 64 chrY Total 104 104 104 104 chrM QC+ 198 191 191 195 chrM Total 210 210 210 210 ------------------------------------------------------------ Overall QC+ 3901408 3903524 3902623 3806920 Overall Total 5894684 5812990 5812990 5857466 Data specific to Phase II is marked with the protocol LSID of 'urn:lsid:perlegen.hapmap.org:Protocol:Genotyping_1.0.0:2' in the genotype release files. For the CEU and YRI plates in Phase II, duplicate samples were not genotyped. The 'NN' on the '.dup' samples is a place holder. The QC-p flag was adjusted to not count these duplicate sample on Phase II. For Phase II, there is a new JPT sample 'NA19012'. For all the Phase I data, a 'NN' was added for this sample, and genotypes were not attempted on this sample. This is a placeholder to keep the file columns aligned. The release includes mitochondria genotypes. Positions of these markers are express relative to the Human Mitochondrial DNA Revised Cambridge Reference Sequence. See http://www.mitomap.org/mitoseq.html. Details on the polymorphic positions can be seen at mtDB - Human Mitochondrial Genome Database . The HapMap database is updated with data submitted to the DCC by centers funded by agencies in the UK, Japan, US, China and Canada. New data are submitted to NCBI's dbSNP database within days and should become available also at http://www.ncbi.nih.gov/SNP/ soon thereafter, once NCBI has incorporated this submission into the next build of dbSNP. --------------------------------------- help@hapmap.org