HapMap data release #24, October 2008, on NCBI B36 assembly, dbSNP b126 --

This release contains genotypes and frequencies from phases I+II of the HapMap project. 
Allele flips for over 40,000 SNPs have been corrected, and over 1,600 chrX SNPs which 
were inadvertently dropped during the ncbi_b35 -> b36 migration, were added back. 

For a list of SNPs with allele flips corrected, see 
http://ftp.hapmap.org/genotypes/2008-10_phaseII/allele_flips_r23a.txt

ChrX SNPs added back in this data release are listed by population panel in
http://ftp.hapmap.org/genotypes/2008-10_phaseII/chrX_added_back/

For additional information, please see the accompanying README document:
http://ftp.hapmap.org/genotypes/2008-10_phaseII/00README.txt


Genotyped SNPs (all QC+ SNP assays):

		CEU	JPT+CHB	YRI
chr1	nr-set	307,691	311,854	305,929
	QC+	379,506	260,621	376,965
chr2	nr-set	326,231	327,180	318,602
	QC+	426,859	424,975	414,218
chr3	nr-set	255,391	255,618	250,155
	QC+	318,915	316,662	310,203
chr4	nr-set	244,849	245,102	238,922
	QC+	300,279	297,978	290,898
chr5	nr-set	247,632	248,154	242,186
	QC+	305,479	305,234	297,753
chr6	nr-set	268,348	272,814	265,955
	QC+	331,958	336,210	328,528
chr7	nr-set	213,023	213,891	208,708
	QC+	266,683	263,442	257,664
chr8	nr-set	213,095	216,811	212,014
	QC+	265,094	267,622	262,075
chr9	nr-set	181,445	183,433	180,147
	QC+	226,324	227,313	223,471
chr10	nr-set	209,342	211,862	204,146
	QC+	258,207	260,597	256,150
chr11	nr-set	204,228	205,538	195,110
	QC+	249,446	250,502	241,634
chr12	nr-set	191,979	193,071	187,294
	QC+	238,713	237,374	234,775
chr13	nr-set	155,905	158,406	152,674
	QC+	189,784	192,325	188,017
chr14	nr-set	123,071	123,764	118,518
	QC+	152,823	153,121	148,619
chr15	nr-set	106,814	107,363	102,431
	QC+	133,787	133,933	129,902
chr16	nr-set	109,692	109,734	104,530
	QC+	136,362	135,992	132,181
chr17	nr-set	89,701	89,576	85,541
	QC+	113,052	112,582	109,703
chr18	nr-set	119,118	120,025	115,768
	QC+	148,442	148,229	145,067
chr19	nr-set	56,607	56,687	53,766
	QC+	72,005	71,829	69,650
chr20	nr-set	119,921	119,989	115,921
	QC+	144,461	143,623	140,243
chr21	nr-set	50,165	51,900	49,154
	QC+	63,893	65,475	63,078
chr22	nr-set	54,786	56,716	54,840
	QC+	68,148	69,964	68,946
chrX	nr-set	119,738	120,641	118,953
	QC+	145,870	146,956	144,261
chrY	nr-set	672	667	668
	QC+	676	672	670
chrMT	nr-set	212	207	211
	QC+	303	299	301

---------------------------------------------------------	
Total	nr-set	3,969,656	4,001,003	3,882,143
	QC+	4,937,069	4,823,530	4,834,972

--------------------------------------- 
help@hapmap.org