-- HapMap data release #4, February 2004 -- Overall summary: Total number of genotyped SNPs released: 324,613 Total number of genotypes: 29,215,170 QC-analysis summary: Total assays w/ gt's: 347,881 >20% missing data per plate: 1,814 <0.001 HWE P-Value: 148 >1 Mendelian Inconsistency: 272 >1 duplicate discrepancy: 42 Not analyzed: 20,992 Genotype success rate: 99.3% NB the last category, 'Not analyzed', includes among other things genotypes for SNPs that do not map to the current build of the reference genome sequence (but did at the time of picking for genotyping). Genotypes for these SNPs may be released at a later date if the SNPs get mapped to a future reference sequence assembly. Release notes: -new data from centers BGI, IMSUT-RIKEN, MCGILL-GQIC, UCSF-WU and WICGR -minor allele frequency file replaced by a more complete allele frequency file -MAF column added to genotype frequency file (to make it match the output from the GBrowse gt-freq dumper)